rasterio/docs/cli.rst
Sean Gillies 1dd8c86982 Add sieve and fix a bug in it.
Sieving of images read directly from GDAL was broken, but is now
fixed, with tests.
2015-02-18 09:47:17 -07:00

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Command Line Interface
======================
Rasterio's new command line interface is a program named "rio".
.. code-block:: console
$ rio
Usage: rio [OPTIONS] COMMAND [ARGS]...
Rasterio command line interface.
Options:
-v, --verbose Increase verbosity.
-q, --quiet Decrease verbosity.
--version Show the version and exit.
--help Show this message and exit.
Commands:
bounds Write bounding boxes to stdout as GeoJSON.
env Print information about the rio environment.
info Print information about a data file.
insp Open a data file and start an interpreter.
merge Merge a stack of raster datasets.
rasterize Rasterize features.
sample Sample a dataset.
shapes Write the shapes of features.
stack Stack a number of bands into a multiband dataset.
It is developed using `Click <http://click.pocoo.org/3/>`__.
Commands are shown below. See ``--help`` of individual commands for more
details.
bounds
------
New in 0.10.
The bounds command writes the bounding boxes of raster datasets to GeoJSON for
use with, e.g., `geojsonio-cli <https://github.com/mapbox/geojsonio-cli>`__.
.. code-block:: console
$ rio bounds tests/data/RGB.byte.tif --indent 2
{
"features": [
{
"geometry": {
"coordinates": [
[
[
-78.898133,
23.564991
],
[
-76.599438,
23.564991
],
[
-76.599438,
25.550874
],
[
-78.898133,
25.550874
],
[
-78.898133,
23.564991
]
]
],
"type": "Polygon"
},
"properties": {
"id": "0",
"title": "tests/data/RGB.byte.tif"
},
"type": "Feature"
}
],
"type": "FeatureCollection"
}
Shoot the GeoJSON into a Leaflet map using geojsonio-cli by typing
``rio bounds tests/data/RGB.byte.tif | geojsonio``.
calc
----
The calc command reads files as arrays, evaluates lisp-like expressions in
their context, and writes the result as a new file. Members of the numpy
module and arithmetic and logical operators are available builtin functions
and operators. It is intended for simple calculations; any calculations
requiring multiple steps is better done in Python using the Rasterio and Numpy
APIs.
Evaluation commonly casts values to ``float``, but this default output data
type can be overridden using calc's ``--dtype`` option.
Input files may have different numbers of bands but should have the same
number of rows and columns.
The following produces a 3-band GeoTIFF with all values scaled by 0.95 and
incremented by 2. In the expression, ``(read 1)`` evaluates to the first
input dataset (3 bands) as a 3-D array.
.. code-block:: console
$ rio calc "(+ 2 (* 0.95 (read 1)))" tests/data/RGB.byte.tif \
> --dtype ubyte /tmp/out.tif
The following produces a 3-band GeoTIFF in which the first band is copied from
the first band of the input and the next two bands are scaled (down) by the
ratio of the first band's mean to their own means. The ``--name`` option is
used to bind datasets to a name within the expression. ``(take a 1)`` gets the
first band of the dataset named ``a`` as a 2-D array and ``(asarray ...)``
collects a sequence of 2-D arrays into a 3-D array for output.
.. code-block:: console
$ rio calc "(asarray (take a 1) (* (take a 2) (/ (mean (take a 1)) (mean (take a 2)))) (* (take a 3) (/ (mean (take a 1)) (mean (take a 3)))))" \
> --name a=tests/data/RGB.byte.tif --dtype ubyte /tmp/out.rgb.tif
The command above is also an example of a calculation that is far beyond the
design of the calc command and something that could be done much more
efficiently in Python.
info
----
Rio's info command prints structured information about a dataset.
.. code-block:: console
$ rio info tests/data/RGB.byte.tif --indent 2
{
"count": 3,
"crs": "EPSG:32618",
"dtype": "uint8",
"driver": "GTiff",
"bounds": [
101985.0,
2611485.0,
339315.0,
2826915.0
],
"lnglat": [
-77.75790625255473,
24.561583285327067
],
"height": 718,
"width": 791,
"shape": [
718,
791
],
"res": [
300.0379266750948,
300.041782729805
],
"nodata": 0.0
}
More information, such as band statistics, can be had using the `--verbose`
option.
.. code-block:: console
$ rio info tests/data/RGB.byte.tif --indent 2
{
"count": 3,
"crs": "EPSG:32618",
"stats": [
{
"max": 255.0,
"mean": 44.434478650699106,
"min": 1.0
},
{
"max": 255.0,
"mean": 66.02203484105824,
"min": 1.0
},
{
"max": 255.0,
"mean": 71.39316199120559,
"min": 1.0
}
],
"dtype": "uint8",
"driver": "GTiff",
"bounds": [
101985.0,
2611485.0,
339315.0,
2826915.0
],
"lnglat": [
-77.75790625255473,
24.561583285327067
],
"height": 718,
"width": 791,
"shape": [
718,
791
],
"res": [
300.0379266750948,
300.041782729805
],
"nodata": 0.0
}
insp
----
The insp command opens a dataset and an interpreter.
.. code-block:: console
$ rio insp tests/data/RGB.byte.tif
Rasterio 0.18 Interactive Inspector (Python 2.7.9)
Type "src.meta", "src.read_band(1)", or "help(src)" for more information.
>>> print src.name
tests/data/RGB.byte.tif
>>> print src.bounds
BoundingBox(left=101985.0, bottom=2611485.0, right=339315.0, top=2826915.0)
merge
-----
The merge command can be used to flatten a stack of identically structured
datasets.
.. code-block:: console
$ rio merge rasterio/tests/data/R*.tif merged.tif
rasterize
---------
New in 0.18.
The rasterize command rasterizes GeoJSON features into a new or existing
raster.
.. code-block:: console
$ rio rasterize test.tif --res 0.0167 < input.geojson
The resulting file will have an upper left coordinate determined by the bounds
of the GeoJSON (in EPSG:4326, which is the default), with a
pixel size of approximately 30 arc seconds. Pixels whose center is within the
polygon or that are selected by brezenhams line algorithm will be burned in
with a default value of 1.
It is possible to rasterize into an existing raster and use an alternative
default value:
.. code-block:: console
$ rio rasterize existing.tif --default_value 10 < input.geojson
It is also possible to rasterize using a template raster, which will be used
to determine the transform, dimensions, and coordinate reference system of the
output raster:
.. code-block:: console
$ rio rasterize test.tif --like tests/data/shade.tif < input.geojson
GeoJSON features may be provided using stdin or specified directly as first
argument, and dimensions may be provided in place of pixel resolution:
.. code-block:: console
$ rio rasterize input.geojson test.tif --dimensions 1024 1024
Other options are available, see:
.. code-block:: console
$ rio rasterize --help
sample
------
New in 0.18.
The sample command reads ``x, y`` positions from stdin and writes the dataset
values at that position to stdout.
.. code-block:: console
$ cat << EOF | rio sample tests/data/RGB.byte.tif
> [220649.99999832606, 2719199.999999095]
> EOF
[18, 25, 14]
The output of the transform command (see below) makes good input for sample.
shapes
------
New in 0.11.
The shapes command extracts and writes features of a specified dataset band out
as GeoJSON.
.. code-block:: console
$ rio shapes tests/data/shade.tif --bidx 1 --precision 6 > shade.geojson
The resulting file, uploaded to Mapbox, looks like this: `sgillies.j1ho338j <https://a.tiles.mapbox.com/v4/sgillies.j1ho338j/page.html?access_token=pk.eyJ1Ijoic2dpbGxpZXMiLCJhIjoiWUE2VlZVcyJ9.OITHkb1GHNh9nvzIfUc9QQ#13/39.6079/-106.4822>`__.
Using the ``--mask`` option you can write out the shapes of a dataset's valid
data region.
.. code-block:: console
$ rio shapes --mask --precision 6 tests/data/RGB.byte.tif | geojsonio
See http://bl.ocks.org/anonymous/raw/ef244954b719dba97926/.
stack
-----
New in 0.15.
The rio-stack command stack a number of bands from one or more input files into
a multiband dataset. Input datasets must be of a kind: same data type,
dimensions, etc. The output is cloned from the first input. By default,
rio-stack will take all bands from each input and write them in same order to
the output. Optionally, bands for each input may be specified using a simple
syntax:
- ``--bidx N`` takes the Nth band from the input (first band is 1).
- ``--bidx M,N,O`` takes bands M, N, and O.
- ``--bidx M..O`` takes bands M-O, inclusive.
- ``--bidx ..N`` takes all bands up to and including N.
- ``--bidx N..`` takes all bands from N to the end.
Examples using the Rasterio testing dataset that produce a copy of it.
.. code-block:: console
$ rio stack RGB.byte.tif stacked.tif
$ rio stack RGB.byte.tif --bidx 1,2,3 stacked.tif
$ rio stack RGB.byte.tif --bidx 1..3 stacked.tif
$ rio stack RGB.byte.tif --bidx ..2 RGB.byte.tif --bidx 3.. stacked.tif
transform
---------
New in 0.10.
The transform command reads a JSON array of coordinates, interleaved, and
writes another array of transformed coordinates to stdout.
To transform a longitude, latitude point (EPSG:4326 is the default) to
another coordinate system with 2 decimal places of output precision, do the
following.
.. code-block:: console
$ echo "[-78.0, 23.0]" | rio transform - --dst_crs EPSG:32618 --precision 2
[192457.13, 2546667.68]
To transform a longitude, latitude bounding box to the coordinate system of
a raster dataset, do the following.
.. code-block:: console
$ echo "[-78.0, 23.0, -76.0, 25.0]" | rio transform - --dst_crs tests/data/RGB.byte.tif --precision 2
[192457.13, 2546667.68, 399086.97, 2765319.94]
Suggestions for other commands are welcome!