diff --git a/main.js b/main.js
index a0173862..2eebe449 100644
--- a/main.js
+++ b/main.js
@@ -1,5 +1,5 @@
 /**
- * @project JSDoc
+ * @project jsdoc
  * @author Michael Mathews <micmath@gmail.com>
  * @license See LICENSE.md file included in this distribution.
  */
@@ -8,11 +8,17 @@
 //~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~//
 
 
-/** @global */
+/** The absolute path to the base directory of the jsdoc application.
+    @type string
+    @global
+ */
 const BASEDIR = arguments[0].replace(/([\/\\])main\.js$/, '$1'); // jsdoc.jar sets argument[0] to the abspath to main.js
 
-/** @global */
-function require(id) { // like commonjs
+/** Include a JavaScript module, defined in the CommonJS way.
+    @global
+    @param {string} id The identifier of the module you require.
+ */
+function require(id, encoding) { // like commonjs
     var path = require.base + id + '.js',
         fileContent = '';
         
@@ -47,18 +53,41 @@ require.cache = {}; // cache module exports. Like: {id: exported}
 //~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~//
 
 	
-/** @global */
+/** Data representing the environment in which this app is running.
+    @namespace
+*/
 env = {
+    /** Running start and finish times. */
     run: {
         start: new Date(),
         finish: null
     },
+    
+    /**
+        The command line arguments passed into jsdoc.
+        @type Array
+    */
     args: Array.prototype.slice.call(arguments, 1), // jsdoc.jar adds argument[0], the abspath to main.js, user args follow
+    
+    
+    /**
+        The parsed JSON data from the configuration file.
+        @type Object
+    */
     conf: {},
+    
+    /**
+        The command line arguments, parsed into a key/value hash.
+        @type Object
+        @example if (env.opts.help) { print 'Helpful message.'; }
+    */
     opts: {}
 };
 
-/** @global */
+/**
+    Data that must be shared across the entire application.
+    @namespace
+*/
 app = {
     jsdoc: {
         scanner: new (require('jsdoc/src/scanner').Scanner)(),
@@ -70,21 +99,29 @@ app = {
 try { main(); }
 finally { env.run.finish = new Date(); }
 
-/** @global */
-function print(/*...*/) {
+/** Print string/s out to the console.
+    @param {string} ... String/s to print out to console.
+ */
+function print() {
     for (var i = 0, leni = arguments.length; i < leni; i++) {
         java.lang.System.out.println('' + arguments[i]);
     }
 }
 
-/** @global */
-function dump(/*...*/) {
+/**
+    Try to recursively print out all key/values in an object.
+    @global
+    @param {Object} ... Object/s to dump out to console.
+ */
+function dump() {
     for (var i = 0, leni = arguments.length; i < leni; i++) {
         print( require('common/dumper').dump(arguments[i]) );
     }
 }
 
-/** @global */
+/** @global
+    @param {string} filepath The path to the script file to include (read and execute).
+*/
 function include(filepath) {
     try {
         load(BASEDIR + filepath);
@@ -94,16 +131,22 @@ function include(filepath) {
     }
 }
 
-/** @global */
-function exit(v) {
-    java.lang.System.exit(v);
+/** 
+    Cause the VM running jsdoc to exit running.
+    @param {number} [n = 0] The exit status.
+ */
+function exit(n) {
+    n = n || 0;
+    java.lang.System.exit(n);
 }
 
 
 //~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~//
 
 
-/** @global */
+/**
+    Run the jsoc application.
+ */
 function main() {
     var sourceFiles,
         docs,
diff --git a/modules/common/dumper.js b/modules/common/dumper.js
index c10e38e5..4224bfd7 100644
--- a/modules/common/dumper.js
+++ b/modules/common/dumper.js
@@ -52,8 +52,6 @@
     function walk(object) {
         var value;
         
-        
-        
         if ( value = getValue(object) ) {
             output += value + ',\n';
         }
diff --git a/package.json b/package.json
index 96941e63..3db97a24 100644
--- a/package.json
+++ b/package.json
@@ -13,7 +13,7 @@
 	"repositories": [
 		{
 			"type": "git",
-			"url": "http://github.com/micmath/JSDoc"
+			"url": "http://github.com/micmath/jsdoc"
 		}
 	],
 	"contributors" : [
diff --git a/templates/default/tmpl/index.mustache b/templates/default/tmpl/index.mustache
index 1c9f6452..1f109418 100644
--- a/templates/default/tmpl/index.mustache
+++ b/templates/default/tmpl/index.mustache
@@ -16,7 +16,7 @@
         .function { color: #666; }
         
         .access { color: #666; }
-        
+/*        
         .symbol-head
         {
         	margin-top: 8px;
@@ -27,9 +27,7 @@
         	background-color: #B8B9CB;
         }
         
-        .detail-list {
-            list-style-type:none;
-        }
+        
         
         .symbol-head .summary {
             font-style: italic;
@@ -40,6 +38,128 @@
             margin-top: 12px;
         }
         
+ */       
+    
+    
+    .detail-list {
+        list-style-type:none;
+    }
+        
+    html {
+        /* stops IE resizing fonts by a massive amount */
+        font-size: 100%
+    }
+    body {
+        /* pixes monospace font sizes in webkit */
+        font-size: 10px;
+        /* following line is picked up by IE6 & 7, which cannot resize pixel-based font sizes */
+        *font-size: 62.5%;
+    }
+    
+    body {
+        font-size: 0.8em;
+        font-family: verdana, sans-serif;
+        /*overflow: hidden;*/
+        zoom: 1;
+        background: url(images/pagebg.png) 0 73px repeat-x;
+        color: #333333;
+    }
+    a:link, a:visited {
+        color: #356a8b;
+        text-decoration: none;
+        border-bottom: 1px dotted #356a8b;
+    }
+    a:hover, a:active {
+        color: #3B607B;
+        border-color: #3B607B;
+        border-bottom-style: solid;
+    }
+    a.image {
+        border: 0;
+    }
+    h1 {
+        font-size: 2em;
+        font-family: arial, sans-serif;
+    }
+    h2 {
+        font-size: 1.7em;
+        margin: 0 0 1em 0;
+        font-family: arial, sans-serif;
+    }
+    h3 {
+        font-size: 1.4em;
+        margin: 0.4em 0;
+        font-family: arial, sans-serif;
+        color: #4e4e4e;
+    }
+    h4 {
+        margin: 1em 0;
+        color: #3B607B;
+    }
+    h5 {
+        margin: 1em 0;
+    }
+    p {
+        margin: 0 0 1em 0;
+        line-height: 1.5;
+    }
+        
+    dl.params dt {
+        border-top: 1px solid #b2b1b1;
+        color: #3B607B;
+        font-weight: bold;
+        padding-top: 8px;
+        margin-bottom: 5px;
+        font-size: 1.1em;
+        float: none;
+        overflow: visible;
+        zoom: 0;
+    }
+    
+    dl.params dt.first {
+        border-top: none;
+    }
+    
+    dl.params dd {
+        border-width: 0;
+        margin-bottom: 16px;
+    }
+    
+    dl.param-properties {
+        font-style: italic;
+        overflow: hidden;
+        zoom: 1;
+        font-size: 0.9em;
+        margin: 1em 0;
+    }
+    dl.param-properties dt span,
+    dl.param-properties dd {
+        color: #555;
+        float: left;
+        margin: 0;
+        padding: 0;
+        display: inline;
+        margin-bottom: 5px;
+        font-size: 1em;
+        border: none;
+    }
+    dl.param-properties dt {
+        clear: both;
+        display: inline;
+        font-size: 1em;
+        padding: 0;
+        float: none;
+        overflow: visible;
+        zoom: 0;
+    }
+    dl.param-properties dt span {
+        width: 85px;
+        clear: both;
+    }
+    dl.param-properties dd.optionalDef {
+        text-indent: -5000px;
+    }
+        
     </style>
 </head>
 
@@ -73,9 +193,9 @@
             
             {{#hasParams}}
             <h3>Parameters:</h3>
-            <ol class="params detail-list">
+            <dl class="params detail-list">
                 {{#params}} {{>param}} {{/params}}
-            </ol>
+            </dl>
             {{/hasParams}}
             
             {{#returns}}
diff --git a/templates/default/tmpl/param.mustache b/templates/default/tmpl/param.mustache
index 6c3ebba2..2d32da25 100644
--- a/templates/default/tmpl/param.mustache
+++ b/templates/default/tmpl/param.mustache
@@ -1,8 +1,19 @@
-<li>
-    {{#type}}
-    {
-        {{#names}}<span class="param-type">{{last}}{{#linkTo}}{{.}}{{/linkTo}}</span>{{^last?}} | {{/last?}}{{#last?}} {{/last?}}{{/names}}
-    }
-    {{/type}}
-    <span class="param-name">{{name}}</span>
-</li>
\ No newline at end of file
+<dt{{#first?}} class="first"{{/first?}}><span class="param-name">{{name}}</span></dt>
+<dd>
+    <dl class="param-properties">
+        {{#type}}
+        <dt><span>Type</span></dt>
+        <dd>{{#names}}<span class="param-type">{{#linkTo}}{{.}}{{/linkTo}}</span>{{^last?}} | {{/last?}}{{#last?}} {{/last?}}{{/names}}</dd>
+        {{/type}}
+        {{#defaultvalue}}
+        <dt><span>Default</span></dt>
+        <dd>{{defaultvalue}}</dd>
+        {{/defaultvalue}}
+        {{#optional}}
+        <dt><span>Optional</span></dt>
+        <dd class="optionalDef">Yes</dd>
+        {{/optional}}
+    </dl>
+    
+    <div class="param-desc">{{description}}</div>
+</dd>
\ No newline at end of file
diff --git a/test/cases/src/dir1/three.js b/test/cases/src/dir1/three.js
new file mode 100644
index 00000000..e69de29b
diff --git a/test/cases/src/ignored.txt b/test/cases/src/ignored.txt
new file mode 100644
index 00000000..e69de29b
diff --git a/test/cases/src/one.js b/test/cases/src/one.js
new file mode 100644
index 00000000..e69de29b
diff --git a/test/cases/src/two.js b/test/cases/src/two.js
new file mode 100644
index 00000000..e69de29b